Celebrating Open Access in microscopy research: a collection from The Company of Biologists
21-27 October marks International Open Access Week 2019. During this week many events are being organised, stimulating discussion on open knowledge and connecting like-minded people and organisations that are all working towards greater accessibility of research. But of course important work in this area is being done all year round and we find ourselves in an exciting transitional time. At The Company of Biologists, we encourage authors to make use of our Open Access options, recognising the benefits for all involved, be it authors, readers or the wider scientific community.
24 October also marks the birthday of Antonie van Leeuwenhoek (1632-1723). A Dutch scientist, Van Leeuwenhoek is considered to be the ‘Father of Microbiology’, best known for his pioneering work in microscopy. He is also a leading example of the importance of sharing knowledge.
Van Leeuwenhoek wasn’t always a scientist. He was working as a linen draper and chamberlain of the sherrifs, but developed a keen interest in lens making in his spare time. Using his homemade microscopes to observe anything from insects to pond water, he discovered protozoa, spermatozoa and bacteria. Though Van Leeuwenhoek never wrote any books, he was introduced to the Royal Society in London and corresponded with them regularly about his observations. As The Royal Society published his letters, other scientists were able to replicate and build on his important work.
To celebrate Antonie van Leeuwenhoek and the importance of sharing knowledge, we have put together a collection of articles on microscopy. The articles come from our five journals: Development, Journal of Cell Science, Journal of Experimental Biology, Disease Models & Mechanisms and Biology Open and of course, they are all free to read and share. We hope you enjoy the collection.
FocalPlane – our upcoming microscopy community site
We are excited to let you know that we are working on FocalPlane, a new resource site hosted by Journal of Cell Science, for anyone with an interest in microscopy. The site, which will be launched in summer 2020, will provide a trusted, curated and centralised place to connect people, resources and information within the microscopy community.
If you are keen to know more, sign up for news and we’ll keep you updated.
TECHNIQUES AND RESOURCES
Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis
Yuko Sato, Lennart Hilbert, Haruka Oda, Yinan Wan, John M. Heddleston, Teng-Leong Chew, Vasily Zaburdaev, Philipp Keller, Timothee Lionnet, Nadine Vastenhouw, Hiroshi Kimura
Development 2019 146: dev179127 doi: 10.1242/dev.179127 Published 30 September 2019
RESOURCE ARTICLE
Deep learning enables automated volumetric assessments of cardiac function in zebrafish
Alexander A. Akerberg, Caroline E. Burns, C. Geoffrey Burns, Christopher Nguyen
Disease Models & Mechanisms 2019 : dmm.040188 doi: 10.1242/dmm.040188 Published 23 September 2019
RESEARCH ARTICLE
Myosin V regulates synaptopodin clustering and localization in the dendrites of hippocampal neurons
Anja Konietzny, Judit González-Gallego, Julia Bär, Alberto Perez-Alvarez, Alexander Drakew, Jeroen A. A. Demmers, Dick H. W. Dekkers, John A. Hammer III, Michael Frotscher, Thomas G. Oertner, Wolfgang Wagner, Matthias Kneussel, Marina Mikhaylova
Journal of Cell Science 2019 132: jcs230177 doi: 10.1242/jcs.230177 Published 22 August 2019
SHORT REPORT
High-speed multifocal plane fluorescence microscopy for three-dimensional visualisation of beating flagella
Benjamin J. Walker, Richard J. Wheeler
Journal of Cell Science 2019 132: jcs231795 doi: 10.1242/jcs.231795 Published 15 August 2019
SHORT REPORT
Anterior-enriched filopodia create the appearance of asymmetric membrane microdomains in polarizing C. elegans zygotes
Nisha Hirani, Rukshala Illukkumbura, Tom Bland, Grégoire Mathonnet, Delphine Suhner, Anne-Cecile Reymann, Nathan W. Goehring
Journal of Cell Science 2019 132: jcs230714 doi: 10.1242/jcs.230714 Published 15 July 2019
METHODS AND TECHNIQUES
SuperCLEM: an accessible correlative light and electron microscopy approach for investigation of neurons and glia in vitro
Daniel G. Booth, Alison J. Beckett, Ian A. Prior, Dies Meijer
Biology Open 2019 8: bio042085 doi: 10.1242/bio.042085 Published 30 May 2019
METHODS AND TECHNIQUES
Beyond the whole-mount phenotype: high-resolution imaging in fluorescence-based applications on zebrafish
Veronika Oralová, Joana T. Rosa, Mieke Soenens, Jan Willem Bek, Andy Willaert, Paul Eckhard Witten, Ann Huysseune
Biology Open 2019 8: bio042374 doi: 10.1242/bio.042374 Published 24 May 2019
RESEARCH ARTICLE
Enhanced transport of nutrients powered by microscale flows of the self-spinning dinoflagellate Symbiodinium sp.
Zheng Zhu, Quan-Xing Liu
Journal of Experimental Biology 2019 222: jeb197947 doi: 10.1242/jeb.197947 Published 24 April 2019
TECHNIQUES AND RESOURCES
Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish
Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken
Development 2019 146: dev173757 doi: 10.1242/dev.173757 Published 21 March 2019
SHORT COMMUNICATION
Identification of a lipid-rich depot in the orbital cavity of the thirteen-lined ground squirrel
Amanda D. V. MacCannell, Kevin J. Sinclair, Glenn J. Tattersall, Charles A. McKenzie, James F. Staples
Journal of Experimental Biology 2019 222: jeb195750 doi: 10.1242/jeb.195750 Published 22 February 2019
RESEARCH ARTICLE
Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch
Dimitrios K. Papadopoulos, Kassiani Skouloudaki, Ylva Engström, Lars Terenius, Rudolf Rigler, Christoph Zechner, Vladana Vukojević, Pavel Tomancak
Development 2019 146: dev168179 doi: 10.1242/dev.168179 Published 25 January 2019
RESEARCH ARTICLE
Object features and T4/T5 motion detectors modulate the dynamics of bar tracking by Drosophila
Mehmet F. Keleş, Jean-Michel Mongeau, Mark A. Frye
Journal of Experimental Biology 2019 222: jeb190017 doi: 10.1242/jeb.190017 Published 16 January 2019
RESEARCH ARTICLE
Intravital microscopy of collective invasion plasticity in breast cancer
Olga Ilina, Leonard Campanello, Pavlo G. Gritsenko, Manon Vullings, Chenlu Wang, Peter Bult, Wolfgang Losert, Peter Friedl
Disease Models & Mechanisms 2018 11: dmm034330 doi: 10.1242/dmm.034330 Published 23 August 2018
METHODS AND TECHNIQUES
Streamlined histone-based fluorescence lifetime imaging microscopy (FLIM) for studying chromatin organisation
Alice Sherrard, Paul Bishop, Melanie Panagi, Maria Beatriz Villagomez, Dominic Alibhai, Abderrahmane Kaidi
Biology Open 2018 7: bio031476 doi: 10.1242/bio.031476 Published 23 March 2018